Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071
Resume Metode Ekstraksi mtDNA
oleh Vendi Eko Susilo G352110071
No | Nama Hewan | Sample | Metode | Genome Target |
1 | Drosophila | whole body?Adult drosophila | alkaline lysis | mtDNA |
2 | collected duringautopsy by Dr. William (human) | Hair | the silica/guanidine thiocyanate (GuSCN) | total genome |
3 | yeast species | cells | 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) | total genome |
4 | Hornbill | Feathers | use a single extractions step with chelex as a extraction medium | total genome |
5 | Insect | eggs | QIAamp® columns (Vallencia, CA) | haploid genome, mtDNA |
6 | cow | fecal | RBB+C | ? |
7 | bear | blood | Qiam kit | total genome |
8 | chicken, goat, cattle and pigs | Fecal | QIAamp DNA stool purification kit | total genome, include gut bacterial consortium |
9 | Human | Human fecal | – UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit | total genome, include gut bacterial consortium |
10 | human | semen | FTA technology | haploid genome, mtDNA |
Sumber:
- Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
- A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
- Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
- DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
- Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
- Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
- Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
- A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
- Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
- 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47
Resume Metode Ekstraksi mtDNA
oleh Vendi Eko Susilo G352110071
No | Nama Hewan | Sample | Metode | Genome Target |
1 | Drosophila | whole body?Adult drosophila | alkaline lysis | mtDNA |
2 | collected duringautopsy by Dr. William (human) | Hair | the silica/guanidine thiocyanate (GuSCN) | total genome |
3 | yeast species | cells | 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) | total genome |
4 | Hornbill | Feathers | use a single extractions step with chelex as a extraction medium | total genome |
5 | Insect | eggs | QIAamp® columns (Vallencia, CA) | haploid genome, mtDNA |
6 | cow | fecal | RBB+C | ? |
7 | bear | blood | Qiam kit | total genome |
8 | chicken, goat, cattle and pigs | Fecal | QIAamp DNA stool purification kit | total genome, include gut bacterial consortium |
9 | Human | Human fecal | – UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit | total genome, include gut bacterial consortium |
10 | human | semen | FTA technology | haploid genome, mtDNA |
Sumber:
- Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
- A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
- Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
- DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
- Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
- Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
- Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
- A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
- Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
- 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47
Resume Metode Ekstraksi mtDNA
oleh Vendi Eko Susilo G352110071
No | Nama Hewan | Sample | Metode | Genome Target |
1 | Drosophila | whole body?Adult drosophila | alkaline lysis | mtDNA |
2 | collected duringautopsy by Dr. William (human) | Hair | the silica/guanidine thiocyanate (GuSCN) | total genome |
3 | yeast species | cells | 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) | total genome |
4 | Hornbill | Feathers | use a single extractions step with chelex as a extraction medium | total genome |
5 | Insect | eggs | QIAamp® columns (Vallencia, CA) | haploid genome, mtDNA |
6 | cow | fecal | RBB+C | ? |
7 | bear | blood | Qiam kit | total genome |
8 | chicken, goat, cattle and pigs | Fecal | QIAamp DNA stool purification kit | total genome, include gut bacterial consortium |
9 | Human | Human fecal | – UltraClean Fecal DNA extraction kit- ExtractMaster Fecal DNA extraction kit | total genome, include gut bacterial consortium |
10 | human | semen | FTA technology | haploid genome, mtDNA |
Sumber:
- Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
- A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
- Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
- DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
- Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes, Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
- Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
- Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
- A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
- Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
- 10. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47