Resume Metode Ekstraksi mtDNA Vendi Eko Susilo G352110071

Posted November 26, 2011 * Comments(0)

Resume Metode Ekstraksi mtDNA

oleh Vendi Eko Susilo  G352110071

 

 

No Nama Hewan Sample Metode Genome Target
1 Drosophila whole body?Adult drosophila alkaline lysis mtDNA
2 collected duringautopsy by Dr. William (human) Hair the silica/guanidine thiocyanate (GuSCN) total genome
3 yeast species cells 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) total genome
4 Hornbill Feathers use a single extractions step with chelex as a extraction medium total genome
5 Insect eggs QIAamp® columns (Vallencia, CA) haploid genome, mtDNA
6 cow fecal RBB+C ?
7 bear blood Qiam kit total genome
8 chicken, goat, cattle and pigs Fecal QIAamp DNA stool purification kit total genome, include gut bacterial consortium
9 Human Human fecal –   UltraClean Fecal DNA extraction kit-   ExtractMaster Fecal DNA extraction kit total genome, include gut bacterial consortium
10 human semen FTA  technology haploid genome, mtDNA

 

Sumber:

  1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
  2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
  3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
  4. DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
  5. Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes,  Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
  6. Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
  7. Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
  8. A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
  9. Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
  10. 10.  Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47

 

 

 

 

 

Resume Metode Ekstraksi mtDNA

oleh Vendi Eko Susilo  G352110071

 

 

No Nama Hewan Sample Metode Genome Target
1 Drosophila whole body?Adult drosophila alkaline lysis mtDNA
2 collected duringautopsy by Dr. William (human) Hair the silica/guanidine thiocyanate (GuSCN) total genome
3 yeast species cells 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) total genome
4 Hornbill Feathers use a single extractions step with chelex as a extraction medium total genome
5 Insect eggs QIAamp® columns (Vallencia, CA) haploid genome, mtDNA
6 cow fecal RBB+C ?
7 bear blood Qiam kit total genome
8 chicken, goat, cattle and pigs Fecal QIAamp DNA stool purification kit total genome, include gut bacterial consortium
9 Human Human fecal –   UltraClean Fecal DNA extraction kit-   ExtractMaster Fecal DNA extraction kit total genome, include gut bacterial consortium
10 human semen FTA  technology haploid genome, mtDNA

 

Sumber:

  1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
  2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
  3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
  4. DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
  5. Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes,  Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
  6. Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
  7. Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
  8. A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
  9. Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
  10. 10.  Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47

 

 

 

 

 

Resume Metode Ekstraksi mtDNA

oleh Vendi Eko Susilo  G352110071

 

 

No Nama Hewan Sample Metode Genome Target
1 Drosophila whole body?Adult drosophila alkaline lysis mtDNA
2 collected duringautopsy by Dr. William (human) Hair the silica/guanidine thiocyanate (GuSCN) total genome
3 yeast species cells 1) boiling, 2) glass bead disruption, and3) a commercially available kit (Gen Toru-Kun Kit/GenTLE) total genome
4 Hornbill Feathers use a single extractions step with chelex as a extraction medium total genome
5 Insect eggs QIAamp® columns (Vallencia, CA) haploid genome, mtDNA
6 cow fecal RBB+C ?
7 bear blood Qiam kit total genome
8 chicken, goat, cattle and pigs Fecal QIAamp DNA stool purification kit total genome, include gut bacterial consortium
9 Human Human fecal –   UltraClean Fecal DNA extraction kit-   ExtractMaster Fecal DNA extraction kit total genome, include gut bacterial consortium
10 human semen FTA  technology haploid genome, mtDNA

 

Sumber:

  1. Rapid Isolation Method of Animal Mitochondrial DNA by the Alkaline Lysis Procedure. Koichiro Tamura 1 and Tadashi Aotsuka 1′: Biochemical Genetics, Vol. 26, Nos. 11/12, 1988
  2. A Silica-Based Mitochondrial DNA Extraction Method Applied to Forensic Hair Shafts and Teeth. Lori E. Baker,1 M.A.; William F. McCormick,1 M.S., M.D.; and Karla J. Matteson,2 Ph.D. (2001)
  3. Comparison of Different Methods for Extraction of Mitochondrial DNA from Human Pathogenic Yeasts. Yohko Yamada*, Koichi Makimura1,2, Hossain Mirhendi1, Kumiko Ueda1, Yayoi Nishiyama1,2, Hideyo Yamaguchi1,2 and Masako Osumi; Jpn. J. Infect. Dis., 55, 122-125, 2002
  4. DNA extraction, amplification and direct sequensing from horbill feathers. Philip A Morina, Jeane Messier, and David S woodroff; J.Sci.Soc. Thailand, 20 (1994) 31-34
  5. Human and Insect Mitochondrial DNA Analysis from Maggots. Jeffrey D. Wells, Ph.D.; Francesco Introna, Jr., M.D.; Giancarlo Di Vella, Ph.D., M.D.; Carlo P. Campobasso, M.D.; Jack Hayes,  Ph.D.; and Felix A. H. Sperling, Ph.D ; JOURNAL OF FORENSIC SCIENCES (2001).
  6. Improved extraction of PCR-quality community DNA from digesta and fecal samples. Zhongtang Yu and Mark Morrison; BioTechniques 36:808-812 (May 2004)
  7. Techniques for application of faecal DNA methods to field studies of Ursids. S. K. WASSER, C. S. HOUSTON, G. M. KOEHLER,* G. G. CADD and S. R. FAIN; Molecular Ecology 1997, 6, 1091–1097
  8. A rapid and low-cost DNA extraction method for isolating Escherichia coli DNA from animal stools. Barnard, T. G.1*, Robertson, C. A.1, Jagals, P.1 and Potgieter, N.2; African Journal of Biotechnology Vol. 10(8), pp. 1485-1490, 21 February, 2011
  9. Comparison of methods for the extraction of bacterial DNA from human faecal samples for analysis by real-time PCR. E.A Nelson1, 2, E.A Palombo1, and S.R Knowles2; (2010).
  10. 10.  Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Yoshihiko Fujita, Shin-ichi Kubo; Y. Fujita, S.-i. Kubo / Legal Medicine 8 (2006) 43–47

 

 

 

 

 

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